The starter control system prevents the starter from accidentally activating when the shift position is not in the P or N position (CVT) or the clutch pedal is released (M/T), or when the engine is running. If the vehicle is turned mistakenly while shift position is not in P or N (CVT) or the clutch pedal is released (M/T) or while the engine is running, the powertrain control module (PCM) will stop power to the starter cut relays. In this system, two starter cut relays are connected in series (starter cut relay 1, starter cut relay 2) to prevent the starter from running continuously due to a starter cut relay malfunction. Also a diagnosis line (START DIAG) is connected to monitor the voltage between the starter cut relay 1 and starter cut relay 2. Based on the diagnosis line signals, the PCM detects an OPEN malfunction of diagnosis line, an ON malfunction of starter cut relay 1, and an ON malfunction of starter cut relay 2. If the voltage of the diagnosis line (START DAIG) is a specified voltage for a set time when the starter is OFF (STS OFF), the PCM detects an ON malfunction of the starter cut relay 1 and stores a DTC.